InterProSurf · Patch Analysis

Patch Analysis

Predict interacting residues on monomeric protein surfaces using patch scoring. Upload a single-chain PDB file to identify functional surface patches.

Submit a job

Input guidelines

  • Upload a single-chain (monomer) PDB file — do not use a complex.
  • Patch size range: 8Å – 15Å. Default score threshold: 95.0.
  • Results are based on the top X% of highest patch scores on the antigen surface.
  • Specify the PDB chain ID (A–Z, a–z, 0–9) or leave blank for default.
  • Use one word for the project name with no spaces.
  • Results open in a new tab upon submission.

Example output

Example output from InterProSurf Patch Analysis
Example patch analysis output

Disclaimer

This service is provided freely to the scientific community for research purposes. There is no warranty, expressed or implied. The user assumes all responsibility for the use, misuse, or inability to use this service. The Sealy Center for Structural Biology is not liable for any damages arising from its use.