EpiSearch: Mapping of Conformational Epitopes

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Provide phage display peptides and a monomer PDB structure to map conformational epitopes.

Typical runtime: a few minutes

Phage display peptides One peptide per line · Cys-constrained libraries supported

Please type or paste your phage display peptides in the following order:

CQMWAPQWGPDC
CKLYWADGELTC
CKLYWADGEFTC
CVDYHYEGTITC
CVDYHYEGAITC

Need guidance? How to use EpiSearch →

Project name Use a single word (no spaces)

Example: TestEp, MyProject1

Email address For notification and reference only

Patch size (Å) Default: 12 for 12-mer libraries

10 for 7-mer, 12 for 12-mer libraries.

Area cutoff Default: 10.0

Minimum value 5.0. Higher values restrict patches to larger surface areas.

Accuracy cutoff Allowed mismatch

Allowed mismatch: 1 to n−2. Default is 3.

PDB file upload Use monomer only · No complexes

Do not upload a protein complex; use a monomeric structure only. Use a simple filename, e.g. ABCD123456XYZ.pdb.